For example, with a human dna search, 20 is minimum matches required, based on the genome size, to filter out lower-quality results. The All Results checkbox disables minimum matches filtering so all results are seen. See our BLAT All FAQ for more information. Search all is only available for default assemblies and attached hubs with dedicated BLAT servers.The new dynamic BLAT servers are not supported, and they are noted as skipped in the output. The Search all checkbox allows you to search all genomes at the same time. Submissions is 50,000 bases or 25,000 letters.Ī valid example is GTCCTCGGAACCAGGACCTCGGCGTGGCCTAGCG (human SOD1). Up to 25 sequencesĬan be submitted at the same time. Sequence of 10000 or fewer letters will be processed. Only DNA sequences of 25,000 or fewer bases and protein or translated Rather than pasting a sequence, you can choose to upload a text file containing the sequence. If separated by lines starting with '>' followed by the sequence name. Paste in a query sequence to find its location in the BLAT Search Genome Genome: Search all genomes
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